SMTL ID : 5wz2.1 (2 other biounits)

Crystal structure of Zika virus NS5 methyltransferase bound to SAM and RNA analogue (m7GpppA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: S.58, G.60, G.83, C.84, G.85, R.86, G.87, G.88, W.89, T.106, K.107, H.112, E.113, V.132, D.133, V.134, F.135, D.148, I.149 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.58, A:G.60, A:C.84, A:R.86, A:G.87, A:G.88, A:W.89, A:K.107, A:E.113, A:E.113, A:E.113, A:E.113, A:D.133, A:V.134, A:D.148, A:D.148 Salt bridges: A:E.113, A:D.148

1 x GTA: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)

GTA.2: 9 residues within 4Å: Chain A: K.15, L.18, N.19, M.21, F.26, S.152, S.153, S.154, S.217 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.15, A:N.19, A:M.21, A:M.21, A:M.21, A:S.152, A:S.153, A:S.153, A:S.154 Water bridges: A:R.215, A:S.217 pi-Stacking: A:F.26, A:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, W. et al., The crystal structure of Zika virus NS5 reveals conserved drug targets. EMBO J. (2017)

Release Date

2017-03-08

Peptides

NS5 MTase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS5 MTase

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