SMTL ID : 5wzx.1 (1 other biounit)

Structural basis for a pentacyclic oleanane-type triterpenoid as a ligand of FXR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7VX: (4aR,6aR,6aS,6bS,8aS,9R,12aR,14bR)-2,2,6a,6b,9,12a-hexamethyl-10-oxidanylidene-1,3,4,5,6,6a,7,8,8a,9,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid(Non-covalent)

7VX.1: 14 residues within 4Å: Chain A: L.44, M.47, M.85, F.86, S.89, I.109, S.112, F.123, H.204, M.207, L.208, W.211, F.218, W.226 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.86, A:F.86, A:F.86, A:F.123, A:L.208, A:F.218, A:W.226, A:W.226

3 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2: 3 residues within 4Å: Chain A: L.97, P.98, L.105 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.97, A:L.105 Hydrogen bonds: A:P.98 BU3.3: 1 residues within 4Å: Chain A: L.42 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.42 BU3.4: 1 residues within 4Å: Chain A: E.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Y. et al., Identification of an Oleanane-Type Triterpene Hedragonic Acid as a Novel Farnesoid X Receptor Ligand with Liver Protective Effects and Anti-inflammatory Activity. Mol. Pharmacol. (2018)

Release Date

2018-01-03

Peptides

Bile acid receptor: A
SRC2-3 peptide from Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Bile acid receptor

SRC2-3 peptide from Nuclear receptor coactivator 2

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