SMTL ID : 5x0g.1

Free serine kinase (E30A mutant) in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: F.40, S.43, V.44, S.47, I.49, F.50, W.51, K.52, D.69, G.70, H.71, H.72, R.73 Ligands: ADP.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.43, A:S.47, A:I.49, A:W.51, A:K.52, A:H.71, A:H.72, A:R.73 Water bridges: A:D.69, A:D.69 Salt bridges: A:H.72, A:R.73 pi-Stacking: A:F.40, A:F.40, A:W.51, A:W.51, A:W.51

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: F.40, S.43, V.44, S.47, I.49, F.50, W.51, K.52, D.69, G.70, H.71, H.72, R.73 Ligands: AMP.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.43, A:S.47, A:I.49, A:W.51, A:K.52, A:D.69, A:G.70, A:H.71, A:H.72, A:R.73 Water bridges: A:H.71 Salt bridges: A:H.71, A:H.72, A:H.72, A:R.73 pi-Stacking: A:F.40, A:F.40, A:W.51, A:W.51, A:W.51

1 x 7WF: 2-hydroxy-3-[4-(2-hydroxy-3-sulfopropyl)piperazin-1-yl]propane-1-sulfonic acid(Non-covalent)

7WF.3: 4 residues within 4Å: Chain A: D.17, Y.18, V.19, F.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.20 Salt bridges: A:D.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagata, R. et al., Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis. ACS Chem. Biol. (2017)

Release Date

2017-04-12

Peptides

Free serine kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Free serine kinase

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