SMTL ID : 5x16.1

Sirt6 apo structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 23 residues within 4Å: Chain A: G.50, A.51, G.52, T.55, D.61, F.62, R.63, W.69, Q.111, H.131, W.186, G.212, T.213, S.214, L.215, I.217, N.238, L.239, Q.240, G.254, Y.255, V.256 Ligands: TBU.4 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.51, A:T.55, A:T.55, A:F.62, A:R.63, A:H.131, A:T.213, A:T.213, A:S.214, A:L.215, A:N.238, A:L.239, A:Q.240, A:Q.240, A:V.256 Water bridges: A:T.55, A:Q.111 Salt bridges: A:R.63, A:R.63, A:R.63

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.139, C.142, C.164, C.175 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.164, A:C.175

2 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.3: 3 residues within 4Å: Chain A: S.44, N.204, R.230 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.204 TBU.4: 6 residues within 4Å: Chain A: H.131, L.184, D.185, W.186, I.217 Ligands: AR6.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.131, A:W.186, A:I.217 Hydrogen bonds: A:D.185

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: E.281, R.282 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Sirt6 apo structure. To Be Published

Release Date

2018-07-04

Peptides

NAD-dependent protein deacetylase sirtuin-6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-6

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