SMTL ID : 5x23.1

Crystal structure of CYP2C9 genetic variant A477T (*30) in complex with multiple losartan molecules

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: R.79, I.94, V.95, W.102, R.106, L.276, A.279, G.280, T.283, T.284, T.287, Q.338, L.344, S.347, L.348, H.350, P.409, F.410, S.411, R.415, C.417, V.418, G.419, A.423 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.95, A:L.276, A:T.283, A:L.344, A:F.410, A:F.410, A:V.418, A:A.423 Hydrogen bonds: A:S.347, A:S.411 Salt bridges: A:R.79, A:R.79, A:R.106, A:H.350, A:R.415 Metal complexes: A:C.417, H2O.3

3 x LSN: [2-butyl-5-chloranyl-3-[[4-[2-(2H-1,2,3,4-tetrazol-5-yl)phenyl]phenyl]methyl]imidazol-4-yl]methanol(Non-covalent)

LSN.2: 17 residues within 4Å: Chain A: A.88, R.90, V.95, F.96, L.183, N.186, L.190, N.218, V.219, M.222, V.274, D.275, G.278, A.279, L.344, L.348 Ligands: LSN.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.95, A:F.96, A:L.183, A:N.186, A:V.219, A:M.222, A:A.279, A:L.344, A:L.348 Hydrogen bonds: A:R.90, A:R.90, A:R.90, A:N.186 pi-Cation interactions: A:R.90 LSN.3: 7 residues within 4Å: Chain A: F.208, P.209, G.210, T.211, N.213, K.214 Ligands: K.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.208, A:N.213 Hydrogen bonds: A:G.210, A:T.211 pi-Stacking: A:F.208 LSN.4: 12 residues within 4Å: Chain A: F.51, I.56, F.82, Q.196, N.200, L.344, P.345, T.346, S.347, P.349, F.458 Ligands: LSN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.51, A:F.51, A:I.56, A:P.349, A:F.458 Hydrogen bonds: A:T.346 pi-Stacking: A:F.82, A:F.458

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: L.395, D.396, E.397, K.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.397 Salt bridges: A:K.402

1 x K: POTASSIUM ION(Non-functional Binders)

K.6: 1 residues within 4Å: Ligands: LSN.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maekawa, K. et al., Structural Basis of Single-Nucleotide Polymorphisms in Cytochrome P450 2C9. Biochemistry (2017)

Release Date

2017-10-25

Peptides

Cytochrome P450 2C9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2C9