SMTL ID : 5x3i.1 (1 other biounit)

Kfla1895 D451A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.153, G.154, G.155, G.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.154, A:G.156 SO4.2: 3 residues within 4Å: Chain A: F.401, S.402, T.403 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:T.403 SO4.3: 3 residues within 4Å: Chain A: T.540, W.541, Q.542 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.541, A:Q.542 Water bridges: A:R.545, A:R.545 SO4.4: 2 residues within 4Å: Chain A: Q.542, R.545 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.542 Salt bridges: A:R.545 SO4.5: 1 residues within 4Å: Chain A: R.606 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.606 SO4.6: 2 residues within 4Å: Chain A: P.572, R.606 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.599 Salt bridges: A:R.606 SO4.7: 1 residues within 4Å: Chain A: R.502 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.449 Water bridges: A:R.502, A:R.502 Salt bridges: A:R.502 SO4.8: 3 residues within 4Å: Chain A: R.731, S.733, R.734 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.733 Salt bridges: A:R.731, A:R.734 SO4.9: 5 residues within 4Å: Chain A: G.701, E.702, R.731, A.732, S.733 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.702, A:E.702, A:S.733, A:S.733, A:S.733 Salt bridges: A:R.731 SO4.10: 2 residues within 4Å: Chain A: R.160, G.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.161

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: V.498, H.499, R.502, H.529 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.499, A:R.502 Water bridges: A:H.529 GOL.12: 9 residues within 4Å: Chain A: E.334, W.392, K.469, A.471, R.520, W.533, D.536, F.569, H.595 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.392, A:K.469, A:R.520, A:H.595 Water bridges: A:N.306 GOL.13: 4 residues within 4Å: Chain A: A.348, V.349, Y.350, V.352 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.350, A:Y.350 Water bridges: A:Y.350, A:Y.350, A:V.352 GOL.14: 8 residues within 4Å: Chain A: Q.446, R.449, D.450, T.453, R.457, A.503, D.506, L.507 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.449, A:T.453, A:R.457 Water bridges: A:Q.446, A:Q.446, A:T.453, A:D.506 GOL.15: 2 residues within 4Å: Chain A: D.355, S.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.357 Water bridges: A:V.352 GOL.16: 5 residues within 4Å: Chain A: P.141, V.143, V.166, S.167, S.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.141 Water bridges: A:S.167, A:S.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Glycoside hydrolase mutant. To Be Published

Release Date

2018-02-07

Peptides

Glycoside hydrolase family 31: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase family 31

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