SMTL ID : 5x40.1

Structure of a CbiO dimer bound with AMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.57, Q.100 Ligands: ACP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.57, H2O.15 MG.3: 4 residues within 4Å: Chain B: S.57, Q.100, Q.178 Ligands: ACP.4 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.57, H2O.13

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 24 residues within 4Å: Chain A: F.26, V.30, K.31, A.32, P.51, N.52, G.53, A.54, G.55, K.56, S.57, T.58, Q.100, Q.178, H.210 Chain B: R.148, H.151, M.152, L.153, S.154, G.155, G.156, Q.157 Ligands: MG.1 25 PLIP interactions: 15 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:N.52, A:G.53, A:G.53, A:A.54, A:G.55, A:K.56, A:K.56, A:K.56, A:S.57, A:T.58, A:T.58, A:Q.100, A:Q.178, B:R.148, B:S.154, B:G.155, B:G.156, B:Q.157, B:Q.157 pi-Stacking: A:F.26, A:F.26 Water bridges: B:R.148, B:R.148, B:H.151, B:G.182 ACP.4: 24 residues within 4Å: Chain A: R.148, H.151, M.152, L.153, S.154, G.155, G.156, Q.157 Chain B: F.26, V.30, K.31, A.32, P.51, N.52, G.53, A.54, G.55, K.56, S.57, T.58, Q.100, Q.178, H.210 Ligands: MG.3 29 PLIP interactions: 12 interactions with chain A, 17 interactions with chain B Hydrogen bonds: A:R.148, A:S.154, A:G.155, A:G.156, A:Q.157, A:Q.157, B:N.52, B:G.53, B:G.53, B:A.54, B:G.55, B:K.56, B:K.56, B:S.57, B:S.57, B:T.58, B:Q.178 Water bridges: A:R.148, A:R.148, A:R.148, A:H.151, A:H.151, A:G.182, B:S.57, B:S.57, B:Q.100, B:D.177 pi-Stacking: B:F.26, B:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bao, Z. et al., Structure and mechanism of a group-I cobalt energy coupling factor transporter. Cell Res. (2017)

Release Date

2017-04-05

Peptides

Cobalt ABC transporter ATP-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cobalt ABC transporter ATP-binding protein