SMTL ID : 5x4q.1

Crystal structure of the BCL6 BTB domain in complex with Compound 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 7Z6: 5-[[5-chloranyl-2-(pyridin-3-ylmethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one(Non-covalent)

7Z6.1: 5 residues within 4Å: Chain A: N.33, R.36, L.37, R.40 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.36, A:R.40

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: H.26, D.29, N.33 Ligands: 7Z6.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.26, A:N.33

1 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: S.51, P.88, E.89, I.90 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamada, Y. et al., Discovery of a B-Cell Lymphoma 6 Protein-Protein Interaction Inhibitor by a Biophysics-Driven Fragment-Based Approach. J. Med. Chem. (2017)

Release Date

2017-05-24

Peptides

B-cell lymphoma 6 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B-cell lymphoma 6 protein

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