SMTL ID : 5x4r.1

Structure of the N-terminal domain (NTD) of MERS-CoV spike protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: G.104, A.105, A.107, N.108, E.232, I.233, Y.257 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.257, A:Y.257 NAG-NAG.2: 8 residues within 4Å: Chain A: D.3, G.5, P.6, R.164, N.205, L.208, M.223, T.225 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.223 Hydrogen bonds: A:D.3, A:D.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Y. et al., Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains. Nat Commun (2017)

Release Date

2017-05-03

Peptides

S protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

S protein