SMTL ID : 5x4s.1

Structure of the N-terminal domain (NTD)of SARS-CoV spike protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.106, S.107, T.108, N.109, V.111, Q.134, I.151 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.151

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.96, E.118 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.118 Hydrogen bonds: A:E.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Y. et al., Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains. Nat Commun (2017)

Release Date

2017-05-03

Peptides

Spike glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spike glycoprotein