SMTL ID : 5x59.1

Prefusion structure of MERS-CoV spike glycoprotein, three-fold symmetry

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 3 residues within 4Å: Chain A: R.204, T.225, N.227 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain A: A.107, N.108, E.232, I.233 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain A: N.49, V.312 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.602, T.604 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: N.853, T.855, Q.992 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: N.768, N.1128 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain A: N.757 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: F.148, N.149 Ligand excluded by PLIP NAG.9: 4 residues within 4Å: Chain A: D.3, V.4, G.5, N.205 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain A: I.169, E.171, R.218, N.219 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain B: R.204, T.225, N.227 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain B: A.107, N.108, E.232, I.233 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain B: N.49, V.312 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain B: N.602, T.604 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain B: N.853, T.855, Q.992 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain B: N.768, N.1128 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain B: N.757 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain B: F.148, N.149 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain B: D.3, V.4, G.5, N.205 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain B: I.169, E.171, R.218, N.219 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain C: R.204, T.225, N.227 Ligand excluded by PLIP NAG.22: 4 residues within 4Å: Chain C: A.107, N.108, E.232, I.233 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain C: N.49, V.312 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain C: N.602, T.604 Ligand excluded by PLIP NAG.25: 3 residues within 4Å: Chain C: N.853, T.855, Q.992 Ligand excluded by PLIP NAG.26: 2 residues within 4Å: Chain C: N.768, N.1128 Ligand excluded by PLIP NAG.27: 1 residues within 4Å: Chain C: N.757 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain C: F.148, N.149 Ligand excluded by PLIP NAG.29: 4 residues within 4Å: Chain C: D.3, V.4, G.5, N.205 Ligand excluded by PLIP NAG.30: 4 residues within 4Å: Chain C: I.169, E.171, R.218, N.219 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Y. et al., Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains. Nat Commun (2017)

Release Date

2017-05-03

Peptides

S protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

S protein

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