- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: D.273, T.280, V.281, L.286, N.288
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.273, A:V.281
- Water bridges: A:V.281, A:N.288
GOL.3: 8 residues within 4Å:- Chain A: I.15, H.16, Y.19, P.21, I.28, N.29, K.252
- Chain D: E.337
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:I.28, A:K.252
- Water bridges: A:H.16, A:H.16, A:Y.19
GOL.4: 6 residues within 4Å:- Chain A: R.91, I.92, K.95, E.227, M.231
- Chain C: V.117
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:I.92, A:K.95, A:E.227, A:E.227, C:T.116
GOL.8: 5 residues within 4Å:- Chain B: D.273, T.280, V.281, L.286, N.288
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.273, B:V.281
- Water bridges: B:V.281, B:N.288
GOL.9: 8 residues within 4Å:- Chain B: I.15, H.16, Y.19, P.21, I.28, N.29, K.252
- Chain C: E.337
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:I.28, B:K.252, C:E.337
- Water bridges: B:H.16, B:H.16, B:Y.19
GOL.10: 6 residues within 4Å:- Chain B: R.91, I.92, K.95, E.227, M.231
- Chain D: V.117
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:I.92, B:K.95, B:E.227, D:T.116
GOL.14: 5 residues within 4Å:- Chain C: D.273, T.280, V.281, L.286, N.288
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.273, C:V.281
- Water bridges: C:V.281, C:N.288
GOL.15: 8 residues within 4Å:- Chain B: E.337
- Chain C: I.15, H.16, Y.19, P.21, I.28, N.29, K.252
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:I.28, C:K.252, B:E.337
- Water bridges: C:H.16, C:H.16, C:Y.19
GOL.16: 6 residues within 4Å:- Chain A: V.117
- Chain C: R.91, I.92, K.95, E.227, M.231
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:I.92, C:K.95, C:E.227, A:T.116
GOL.20: 5 residues within 4Å:- Chain D: D.273, T.280, V.281, L.286, N.288
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.273, D:V.281
- Water bridges: D:V.281, D:N.288
GOL.21: 8 residues within 4Å:- Chain A: E.337
- Chain D: I.15, H.16, Y.19, P.21, I.28, N.29, K.252
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:I.28, D:K.252
- Water bridges: D:H.16, D:H.16, D:Y.19
GOL.22: 6 residues within 4Å:- Chain B: V.117
- Chain D: R.91, I.92, K.95, E.227, M.231
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:T.116, D:I.92, D:K.95, D:E.227, D:E.227
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 4 residues within 4Å:- Chain A: E.71, Q.189, P.190, L.191
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.71, A:E.71
MG.6: 6 residues within 4Å:- Chain A: T.37, F.38, Q.40, E.51
- Chain C: A.330, E.331
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:F.38, A:E.51
MG.11: 4 residues within 4Å:- Chain B: E.71, Q.189, P.190, L.191
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.71, B:E.71
MG.12: 6 residues within 4Å:- Chain B: T.37, F.38, Q.40, E.51
- Chain D: A.330, E.331
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:F.38, B:E.51
MG.17: 4 residues within 4Å:- Chain C: E.71, Q.189, P.190, L.191
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.71, C:E.71
MG.18: 6 residues within 4Å:- Chain A: A.330, E.331
- Chain C: T.37, F.38, Q.40, E.51
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:F.38, C:E.51
MG.23: 4 residues within 4Å:- Chain D: E.71, Q.189, P.190, L.191
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.71, D:E.71
MG.24: 6 residues within 4Å:- Chain B: A.330, E.331
- Chain D: T.37, F.38, Q.40, E.51
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:F.38, D:E.51
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sagong, H.-Y. et al., Structural Insights into Substrate Specificity of Cystathionine gamma-Synthase from Corynebacterium glutamicum. J. Agric. Food Chem. (2017)
- Release Date
- 2017-03-01
- Peptides
- Cystathionine beta-lyases/cystathionine gamma-synthases: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sagong, H.-Y. et al., Structural Insights into Substrate Specificity of Cystathionine gamma-Synthase from Corynebacterium glutamicum. J. Agric. Food Chem. (2017)
- Release Date
- 2017-03-01
- Peptides
- Cystathionine beta-lyases/cystathionine gamma-synthases: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A