SMTL ID : 5x6f.2 (1 other biounit)

Crystal structure of Phosphopantetheine adenylyltransferase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-hexamer

Ligands

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.6: 3 residues within 4Å: Chain C: G.8, T.9, R.87 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.87, C:R.87 IPA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.13: 3 residues within 4Å: Chain F: G.8, T.9, R.87 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.87, F:R.87

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: G.8, T.9, R.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.9, A:R.87 GOL.3: 2 residues within 4Å: Chain B: H.75, E.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.75 GOL.4: 5 residues within 4Å: Chain B: L.73, L.101, N.105 Chain D: E.133, I.134 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:E.133, B:L.73, B:N.105 GOL.5: 3 residues within 4Å: Chain B: G.8, T.9, R.87 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.9, B:T.9, B:T.9, B:R.87, B:R.87 GOL.7: 6 residues within 4Å: Chain C: T.71, L.72, L.73, L.101 Chain E: E.133, L.137 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:T.71, C:L.73, E:E.133, E:E.133 GOL.9: 3 residues within 4Å: Chain D: G.8, T.9, R.87 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.9, D:R.87 GOL.10: 2 residues within 4Å: Chain E: H.75, E.79 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:H.75 GOL.11: 5 residues within 4Å: Chain A: E.133, I.134 Chain E: L.73, L.101, N.105 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:L.73, E:N.105, A:E.133, A:E.133 GOL.12: 3 residues within 4Å: Chain E: G.8, T.9, R.87 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.9, E:T.9, E:R.87, E:R.87 GOL.14: 6 residues within 4Å: Chain B: E.133, L.137 Chain F: T.71, L.72, L.73, L.101 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:T.71, F:L.73, B:E.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mondal, A. et al., Umbrella Sampling and X-ray Crystallographic Analysis Unveil an Arg-Asp Gate Facilitating Inhibitor Binding Inside Phosphopantetheine Adenylyltransferase Allosteric Cleft. J Phys Chem B (2018)

Release Date

2018-02-14

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
B

E
D

F
F

Phosphopantetheine adenylyltransferase

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