SMTL ID : 5x6n.1

Structure of P. Knowlesi DBL Domain Capable of binding Human Duffy Antigen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 3 residues within 4Å: Chain A: K.217, L.218, Y.219 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.219

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.96, K.100 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.100, A:K.100, A:K.177 Salt bridges: A:K.96, A:K.100, A:K.177 SO4.3: 4 residues within 4Å: Chain A: N.17, R.20, Y.42, Q.43 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.17, A:Q.43 Water bridges: A:R.25 Salt bridges: A:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S.K. et al., Structural basis for Duffy recognition by the malaria parasite Duffy-binding-like domain. Nature (2006)

Release Date

2017-03-08

Peptides

Duffy binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Duffy binding protein