SMTL ID : 5x74.1

The crystal Structure PDE delta in complex with compound (R, R)-1g

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x JAY: (2R)-2-(2-fluorophenyl)-3-[2-[4-[(2R)-2-(2-fluorophenyl)-4-oxidanylidene-1,2-dihydroquinazolin-3-yl]piperidin-1-yl]ethyl]-1,2-dihydroquinazolin-4-one(Non-covalent)

JAY.1: 23 residues within 4Å: Chain A: M.20, L.22, W.32, L.38, A.47, I.53, L.54, C.56, V.59, R.61, Q.78, V.80, E.88, W.90, I.109, A.111, M.117, L.123, I.129, T.131, V.145, L.147, Y.149 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.38, A:A.47, A:L.54, A:V.59, A:A.111, A:L.123, A:I.129 Hydrogen bonds: A:R.61, A:Q.78, A:E.88, A:T.131, A:Y.149 Water bridges: A:T.131 pi-Stacking: A:W.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta