SMTL ID : 5x7g.1

Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.406, E.408, T.425, G.428, D.523 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.406, A:T.425, A:G.428, A:D.523, A:D.523 CA.2: 3 residues within 4Å: Chain A: D.646, Q.648, N.651 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.646, A:Q.648, H2O.2, H2O.2, H2O.3

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: L.610, V.613 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.610, A:L.610, A:V.613

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.4: 4 residues within 4Å: Chain A: H.365, Y.397, R.398, R.650 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.365, A:R.398 MLI.5: 8 residues within 4Å: Chain A: H.66, K.100, N.591, D.595, D.597, T.631, E.633, Y.634 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.591 Hydrogen bonds: A:D.595, A:D.595, A:T.631, A:E.633 Salt bridges: A:H.66, A:K.100 MLI.6: 3 residues within 4Å: Chain A: M.612, V.613, H.659 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.659

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: S.605, V.608, A.615, S.616, H.626 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.605, A:H.626 Water bridges: A:A.615, A:G.617 GOL.8: 4 residues within 4Å: Chain A: R.457, W.491, H.493 Ligands: GOL.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.457, A:R.457 GOL.9: 3 residues within 4Å: Chain A: H.421, W.488, N.521 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.521, A:N.521 Water bridges: A:N.420 GOL.10: 4 residues within 4Å: Chain A: N.400, T.425, R.457 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.400, A:R.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, Z. et al., Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase. Biosci. Rep. (2017)

Release Date

2017-04-26

Peptides

Cycloisomaltooligosaccharide glucanotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cycloisomaltooligosaccharide glucanotransferase

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