- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x S0N: o-succinylbenzoyl-N-coenzyme A(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: F.218
- Ligands: S0N.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:F.218, H2O.11, H2O.12, H2O.14
MG.3: 5 residues within 4Å:- Chain A: N.6, L.8, H.70, F.73, L.74
No protein-ligand interaction detected (PLIP)MG.4: 1 residues within 4Å:- Chain A: E.115
No protein-ligand interaction detected (PLIP)MG.19: 2 residues within 4Å:- Chain B: F.218
- Ligands: S0N.18
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:F.218, H2O.27
- 6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.5: 5 residues within 4Å:- Chain A: M.149, H.195, I.196, T.288
- Ligands: S0N.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.288
CA.6: 2 residues within 4Å:- Chain A: E.354, F.357
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.354, A:F.357
CA.11: 4 residues within 4Å:- Chain B: W.187, S.200, A.201, K.204
No protein-ligand interaction detected (PLIP)CA.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.13: 5 residues within 4Å:- Chain B: N.178, F.282, T.296, L.297, S.298
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:S.298
CA.14: 3 residues within 4Å:- Chain B: K.85, Y.451
- Ligands: S0N.18
No protein-ligand interaction detected (PLIP)- 2 x NA: SODIUM ION(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 8 residues within 4Å:- Chain A: L.177, L.179, G.180, R.257
- Chain B: I.181, T.182, E.183, Y.208
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.183
- Water bridges: B:Y.208, A:L.177, A:R.257
PEG.9: 3 residues within 4Å:- Chain A: G.365, L.367, R.381
No protein-ligand interaction detected (PLIP)PEG.10: 4 residues within 4Å:- Chain A: M.9, A.12, Q.13, F.34
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.12
- Water bridges: A:Q.13
PEG.16: 4 residues within 4Å:- Chain B: M.9, A.12, Q.13, F.34
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.12, B:Q.13
PEG.17: 5 residues within 4Å:- Chain B: E.334, G.365, D.366, L.367, R.381
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Y. et al., Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode. J. Biol. Chem. (2017)
- Release Date
- 2017-06-07
- Peptides
- 2-succinylbenzoate--CoA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x S0N: o-succinylbenzoyl-N-coenzyme A(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Y. et al., Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode. J. Biol. Chem. (2017)
- Release Date
- 2017-06-07
- Peptides
- 2-succinylbenzoate--CoA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C