SMTL ID : 5x8v.1

Y92H mutant of thermus thermophilus HB8 thymidylate kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.131, R.159, Y.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.131, A:R.159 Water bridges: A:L.132 NA.3: 5 residues within 4Å: Chain B: T.7, E.9, H.92, D.94, T.127 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.7, B:E.9, B:E.9, B:T.127 Water bridges: B:D.94 NA.4: 5 residues within 4Å: Chain B: Y.62, S.66, R.69, L.93, A.115 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.66, B:R.69 NA.5: 5 residues within 4Å: Chain B: R.112, L.165, A.168, E.169, F.173 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.112, B:L.165 Water bridges: B:R.172

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: G.13, S.14, G.15, K.16, T.17 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: G.13, S.14, G.15, K.16, T.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaudhary, S.K. et al., Structural and functional roles of dynamically correlated residues in thymidylate kinase. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-03-14

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Thymidylate kinase