SMTL ID : 5xau.2 (1 other biounit)

Crystal structure of integrin binding fragment of laminin-511

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.140, L.157, L.213, N.215, D.566 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.140, A:L.157, A:L.213, A:D.566, H2O.9

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.49, R.50, G.51, N.54 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.49 Hydrogen bonds: A:N.49, A:N.54 NAG.3: 3 residues within 4Å: Chain A: N.556, T.558, W.561 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.558, A:T.558, A:T.558 NAG.4: 9 residues within 4Å: Chain A: H.477, G.478, F.479, L.596, P.597, E.598, I.602, N.604, V.633 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.596, A:E.598 NAG.5: 4 residues within 4Å: Chain A: E.342, H.475, H.477, N.634 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.477, A:N.634

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takizawa, M. et al., Mechanistic basis for the recognition of laminin-511 by alpha 6 beta 1 integrin. Sci Adv (2017)

Release Date

2017-09-20

Peptides

Laminin subunit alpha-5: A
Laminin subunit beta-1: B
Laminin subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Laminin subunit alpha-5

Laminin subunit beta-1

Laminin subunit gamma-1

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