SMTL ID : 5xbp.1

Oxygenase component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-mer

Ligands

3 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.206, H.211, D.360 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.206, A:H.211, A:D.360, A:D.360 FE.3: 3 residues within 4Å: Chain C: H.206, H.211, D.360 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.206, C:H.211, C:D.360, H2O.2 FE.5: 3 residues within 4Å: Chain E: H.206, H.211, D.360 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.206, E:H.211, E:D.360, E:D.360

3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 8 residues within 4Å: Chain A: C.79, H.81, R.82, G.83, C.99, Y.101, H.102, G.103 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.79, A:H.81, A:C.99, A:H.102 FES.4: 9 residues within 4Å: Chain C: C.79, H.81, R.82, G.83, C.99, Y.101, H.102, G.103, W.104 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.79, C:H.81, C:C.99, C:H.102 FES.6: 8 residues within 4Å: Chain E: C.79, H.81, R.82, G.83, C.99, Y.101, H.102, G.103 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.79, E:H.81, E:C.99, E:H.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumari, A. et al., Structural and functional studies of ferredoxin and oxygenase components of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2. PLoS ONE (2017)

Release Date

2017-04-19

Peptides

3NT oxygenase alpha subunit: ACE
3NT oxygenase beta subunit: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

E
G

B
C

D
F

F
I

3NT oxygenase alpha subunit

3NT oxygenase beta subunit