SMTL ID : 5xdt.1

Staphylococcus aureus FtsZ 12-316 complexed with TXA707

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: G.12, G.13, G.14, N.17, R.21, G.96, M.97, G.99, G.100, T.101, G.102, T.125, P.127, E.131, R.135, N.158, F.175 Ligands: MB3.4 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.13, A:G.14, A:N.17, A:R.21, A:R.21, A:G.100, A:T.101, A:T.101, A:T.101, A:G.102, A:T.125, A:E.131, A:R.135, A:R.135, A:N.158, A:N.158 Water bridges: A:N.36, A:G.96, A:T.103, A:T.103 pi-Stacking: A:F.175 pi-Cation interactions: A:F.175

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: L.192, V.195, N.200, L.201 Ligands: ZI7.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.192, A:V.195, A:L.201

1 x ZI7: 2,6-bis(fluoranyl)-3-[[6-(trifluoromethyl)-[1,3]thiazolo[5,4-b]pyridin-2-yl]methoxy]benzamide(Non-covalent)

ZI7.3: 23 residues within 4Å: Chain A: M.90, F.92, G.185, G.188, I.189, D.191, L.192, V.195, G.197, V.199, N.200, L.201, V.206, M.210, M.218, L.253, N.255, G.287, T.288, V.289, T.301, I.303 Ligands: CA.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.189, A:I.189, A:D.191, A:I.303 Hydrogen bonds: A:G.197, A:L.201, A:N.255, A:T.288 Water bridges: A:G.188 Halogen bonds: A:V.195

2 x MB3: 1-methylpyrrolidin-2-one(Non-covalent)

MB3.4: 10 residues within 4Å: Chain A: G.14, G.15, T.94, S.95, G.96, V.123, T.125, A.178, D.179 Ligands: GDP.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.125 Hydrogen bonds: A:D.179 Water bridges: A:R.21 MB3.5: 1 residues within 4Å: Chain A: R.59 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujita, J. et al., Structural Flexibility of an Inhibitor Overcomes Drug Resistance Mutations in Staphylococcus aureus FtsZ. ACS Chem. Biol. (2017)

Release Date

2017-08-02

Peptides

Cell division protein FtsZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein FtsZ

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