SMTL ID : 5xea.1

Structure of Thogoto virus envelope glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-trimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: L.166, N.168, S.170, V.172, W.182, T.183, E.184 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.172, A:W.182 Hydrogen bonds: A:W.182 Water bridges: A:T.183, A:T.183 NAG-NAG.2: 6 residues within 4Å: Chain B: L.166, N.168, S.170, V.172, W.182, E.184 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.172, B:W.182 Hydrogen bonds: B:W.182 NAG-NAG.3: 4 residues within 4Å: Chain B: W.155, N.158, Q.237, N.246 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: N.399, S.401 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 7 residues within 4Å: Chain C: L.166, N.168, S.170, V.172, W.182, T.183, E.184 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:V.172 Hydrogen bonds: C:W.182, C:T.183, C:T.183 NAG-NAG-BMA.6: 6 residues within 4Å: Chain C: S.29, T.31, E.201, N.246, F.247, S.248 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: Y.33, N.158, N.246 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.158 NAG.8: 2 residues within 4Å: Chain A: N.399, S.401 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain C: N.399, S.401 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.399, C:S.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, R. et al., Structures of human-infecting Thogotovirus fusogens support a common ancestor with insect baculovirus. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-10-04

Peptides

Envelope glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Envelope glycoprotein