SMTL ID : 5xeg.1

The structure of OsALKBH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 14 residues within 4Å: Chain A: R.48, L.126, N.128, Y.130, L.136, H.139, D.141, H.199, V.201, R.223, N.225, T.227, R.229 Ligands: MN.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.128, A:N.128, A:Y.130, A:S.157 Water bridges: A:N.225, A:T.227, A:R.229, A:R.229, A:R.229 Salt bridges: A:R.48, A:H.139, A:R.223, A:R.229

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.139, D.141, H.199 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.199, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, C. et al., Identification and analysis of adenine N6-methylation sites in the rice genome. Nat Plants (2018)

Release Date

2018-06-13

Peptides

Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed

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