SMTL ID : 5xeq.1

Crystal Structure of human MDGA1 and human neuroligin-2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.14 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: G.263, Y.290, N.292, K.304 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain D: G.263, Y.290, N.292, K.304 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Q.450, N.484, F.485, S.486 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain B: N.220 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.220 NAG.4: 1 residues within 4Å: Chain B: N.242 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.242 NAG.6: 4 residues within 4Å: Chain C: Q.450, N.484, F.485, S.486 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain D: N.220 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.220 NAG.8: 1 residues within 4Å: Chain D: N.242 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J.A. et al., Structural Insights into Modulation of Neurexin-Neuroligin Trans-synaptic Adhesion by MDGA1/Neuroligin-2 Complex. Neuron (2017)

Release Date

2017-07-12

Peptides

Neuroligin-2: AC
MAM domain-containing glycosylphosphatidylinositol anchor protein 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Neuroligin-2

MAM domain-containing glycosylphosphatidylinositol anchor protein 1