SMTL ID : 5xfh.1

Crystal structure of Orysata lectin in complex with biantennary N-glycan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x BMA- MAN- NAG- GAL- MAN- NAG: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose

BMA-MAN-NAG-GAL-MAN-NAG.1: 16 residues within 4Å: Chain A: G.13, G.14, S.15, L.88, G.133, T.134, L.135, D.137 Chain B: G.13, G.14, D.87, L.88, G.133, T.134, L.135, D.137 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.134, A:S.15, B:G.14, B:G.133, B:T.134, B:L.135, B:L.135 Water bridges: A:Q.17, A:Q.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa. Glycobiology (2017)

Release Date

2017-10-18

Peptides

Salt stress-induced protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Salt stress-induced protein