SMTL ID : 5xfp.1 (2 other biounits)

Binary complex of PHF1 and a double stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, C.86, C.112, C.115 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:C.86, A:C.112, A:C.115 ZN.2: 4 residues within 4Å: Chain A: C.165, C.167, H.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.165, A:C.167, A:H.188, A:C.191 ZN.3: 4 residues within 4Å: Chain A: C.66, C.69, H.91, C.94 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.66, A:C.69, A:H.91, A:C.94 ZN.4: 4 residues within 4Å: Chain A: C.180, C.183, C.210, C.213 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.180, A:C.183, A:C.210, A:C.213

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 5 residues within 4Å: Chain A: W.17, F.41, D.43, S.45, F.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Polycomb-like proteins link the PRC2 complex to CpG islands. Nature (2017)

Release Date

2017-09-13

Peptides

PHD finger protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHD finger protein 1

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