SMTL ID : 5xfq.1

Ternary complex of PHF1, a DNA duplex and a histone peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.66, C.69, H.91, C.94 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.66, A:C.69, A:H.91, A:C.94 ZN.2: 4 residues within 4Å: Chain A: C.83, C.86, C.112, C.115 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:C.86, A:C.112, A:C.115 ZN.3: 4 residues within 4Å: Chain A: C.165, C.167, H.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.165, A:C.167, A:H.188, A:C.191 ZN.4: 4 residues within 4Å: Chain A: C.180, C.183, C.210, C.213 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.180, A:C.183, A:C.210, A:C.213 ZN.5: 4 residues within 4Å: Chain B: C.165, C.167, H.188, C.191 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.165, B:C.167, B:H.188, B:C.191 ZN.6: 4 residues within 4Å: Chain B: C.180, C.183, C.210, C.213 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.180, B:C.183, B:C.210, B:C.213 ZN.7: 4 residues within 4Å: Chain B: C.66, C.69, H.91, C.94 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.66, B:C.69, B:H.91, B:C.94 ZN.8: 4 residues within 4Å: Chain B: C.83, C.86, C.112, C.115 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.83, B:C.86, B:C.112, B:C.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Polycomb-like proteins link the PRC2 complex to CpG islands. Nature (2017)

Release Date

2017-09-13

Peptides

PHD finger protein 1: AB
Peptide from Histone H3: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

F
F

PHD finger protein 1

Peptide from Histone H3