SMTL ID : 5xfr.1

Ternary complex of MTF2, DNA and histone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x M3L- LYS- PRO: Peptide from Histone H3.1(Non-covalent)

M3L-LYS-PRO.1: 9 residues within 4Å: Chain A: W.15, L.19, F.20, Y.21, F.39, E.40, D.41, S.43, R.121 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.19, A:Y.21, A:D.41 Hydrogen bonds: A:E.40, A:R.121 Salt bridges: A:D.41 pi-Cation interactions: A:W.15, A:W.15, A:Y.21, A:F.39 M3L-LYS-PRO.2: 8 residues within 4Å: Chain B: W.15, L.19, F.20, Y.21, F.39, D.41, S.43, R.121 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.19, B:Y.21, B:Y.21, B:F.39 Hydrogen bonds: B:R.121 Salt bridges: B:D.41 pi-Cation interactions: B:W.15, B:W.15, B:Y.21, B:F.39

8 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.64, C.67, H.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.64, A:C.67, A:H.89, A:C.92 ZN.4: 4 residues within 4Å: Chain A: C.81, C.84, C.110, C.113 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.81, A:C.84, A:C.110, A:C.113 ZN.5: 4 residues within 4Å: Chain A: C.178, C.181, C.208, C.211 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.178, A:C.181, A:C.208, A:C.211 ZN.6: 4 residues within 4Å: Chain A: C.163, C.165, H.186, C.189 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.163, A:C.165, A:H.186, A:C.189 ZN.7: 4 residues within 4Å: Chain B: C.81, C.84, C.110, C.113 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.81, B:C.84, B:C.110, B:C.113 ZN.8: 4 residues within 4Å: Chain B: C.64, C.67, H.89, C.92 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.64, B:H.89, B:C.92 ZN.9: 4 residues within 4Å: Chain B: C.163, C.165, H.186, C.189 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.163, B:C.165, B:H.186, B:C.189 ZN.10: 4 residues within 4Å: Chain B: C.178, C.181, C.208, C.211 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.178, B:C.181, B:C.208, B:C.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Polycomb-like proteins link the PRC2 complex to CpG islands. Nature (2017)

Release Date

2017-09-13

Peptides

Metal-response element-binding transcription factor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Metal-response element-binding transcription factor 2