SMTL ID : 5xfw.1 (1 other biounit)

Crystal structures of FMN-free form of dihydroorotate dehydrogenase from Trypanosoma brucei

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

8 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 10 residues within 4Å: Chain A: K.65, N.89, M.91, G.92, L.93, P.94, C.152, P.153, N.154, N.216 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:M.91, A:G.92, A:L.93, A:N.154, A:N.216 Water bridges: A:K.65, A:S.66, A:S.66, A:K.186 Salt bridges: A:K.65, A:K.65 MLI.2: 6 residues within 4Å: Chain A: I.193, R.260, R.261 Chain B: K.236, Q.237, F.239 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Water bridges: A:R.261, A:R.261 Salt bridges: A:R.260, A:R.261 Hydrophobic interactions: B:F.239 Hydrogen bonds: B:Q.237 MLI.3: 3 residues within 4Å: Chain A: R.72, T.73, G.74 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.73, A:G.74 Water bridges: A:R.72, A:R.72 Salt bridges: A:R.72, A:R.72 MLI.4: 7 residues within 4Å: Chain A: L.51, R.52, T.55, Y.104, T.108, H.109, D.110 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.52 Hydrogen bonds: A:Y.104, A:T.108, A:D.110 Salt bridges: A:H.109 MLI.5: 8 residues within 4Å: Chain A: S.217, G.243, G.244, V.247, G.271, G.272, G.293, T.294 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.244, A:G.272, A:G.293, A:T.294 Water bridges: A:N.216, A:G.271, A:V.273, A:V.273, A:A.295 MLI.6: 10 residues within 4Å: Chain B: K.65, N.89, M.91, G.92, L.93, P.94, C.152, P.153, N.154, N.216 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.89, B:M.91, B:G.92, B:L.93, B:N.154, B:N.216 Water bridges: B:S.66, B:N.89, B:N.149, B:N.154 Salt bridges: B:K.65, B:K.65 MLI.7: 6 residues within 4Å: Chain A: K.236, Q.237, F.239 Chain B: I.193, R.260, R.261 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.239 Water bridges: A:K.236, B:R.261, B:R.261 Salt bridges: B:R.260, B:R.261 MLI.8: 8 residues within 4Å: Chain B: L.51, R.52, T.55, E.56, Y.104, T.108, H.109, D.110 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.55, B:E.56, B:Y.104, B:D.110 Salt bridges: B:H.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubota, T. et al., Crystal structures of FMN-bound and FMN-free forms of dihydroorotate dehydrogenase fromTrypanosoma brucei. FEBS Open Bio (2018)

Release Date

2018-04-25

Peptides

Dihydroorotate dehydrogenase (fumarate): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotate dehydrogenase (fumarate)

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