SMTL ID : 5xge.1

Crystal structure of the PAS-GGDEF-EAL domain of PA0861 from Pseudomonas aeruginosa in complex with cyclic di-GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

homo-dimer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 18 residues within 4Å: Chain A: Q.337, E.353, L.355, L.356, R.357, P.368, D.385, V.388, N.414, S.416, E.446, D.476, D.477, E.533, F.534, E.536, G.554, L.555 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.337, A:E.353, A:L.356, A:N.414, A:N.414, A:E.536, A:L.555 Salt bridges: A:R.357, A:D.385, A:E.536 pi-Stacking: A:F.534, A:F.534 C2E.2: 18 residues within 4Å: Chain B: Q.337, E.353, L.355, L.356, R.357, P.368, D.385, V.388, N.414, S.416, E.446, D.476, D.477, E.533, F.534, E.536, G.554, L.555 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.337, B:E.353, B:L.356, B:N.414, B:N.414, B:E.446, B:L.555 Salt bridges: B:R.357, B:D.385, B:E.536 pi-Stacking: B:F.534, B:F.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Insights into Biofilm Dispersal Regulation from the Crystal Structure of the PAS-GGDEF-EAL Region of RbdA from Pseudomonas aeruginosa. J. Bacteriol. (2018)

Release Date

2017-12-20

Peptides

Uncharacterized protein PA0861: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein PA0861

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