SMTL ID : 5xgp.1

structure of Sizzled from Xenopus laevis at 2.08 angstroms resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.3, V.5, L.24, T.31, N.32, M.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.33 Water bridges: A:A.34 Salt bridges: A:K.3 SO4.2: 6 residues within 4Å: Chain A: A.12, M.13, Q.44, L.47, Q.48, R.56 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.44, A:Q.48 Salt bridges: A:R.56

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: N.155, R.235 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: L.138, I.139, K.211 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: P.217 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: K.167 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: V.89, C.92, S.132 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: P.217, Q.240, K.241 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: N.156, K.185 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: A.87, P.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bu, Q. et al., The crystal structure of full-length Sizzled from Xenopus laevis yields insights into Wnt-antagonistic function of secreted Frizzled-related proteins. J. Biol. Chem. (2017)

Release Date

2017-08-23

Peptides

Secreted Xwnt8 inhibitor sizzled: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Secreted Xwnt8 inhibitor sizzled