SMTL ID : 5xhe.1

Crystal structure analysis of the second bromodomain of BRD2 covalently linked to b-mercaptoethanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 6 residues within 4Å: Chain A: W.28, P.29, C.83, D.92, V.93 Ligands: GOL.4 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.84, R.98, Q.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.98 GOL.3: 3 residues within 4Å: Chain A: K.60, D.65, E.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.60, A:K.60 Water bridges: A:K.60 GOL.4: 6 residues within 4Å: Chain A: L.41, Y.44, C.83, Y.86, N.87 Ligands: PGE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.87, A:N.87 Water bridges: A:Y.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathur, S. et al., Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs. J. Biomol. Struct. Dyn. (2018)

Release Date

2017-09-06

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2