SMTL ID : 5xhk.1

Crystal structure of the BRD2-BD2 in complex with phenanthridinone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62 Water bridges: A:K.62 GOL.2: 2 residues within 4Å: Chain A: L.21, Y.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.21 Water bridges: A:K.23, A:Y.33

1 x 2ME: METHOXYETHANE(Non-covalent)

2ME.3: 5 residues within 4Å: Chain A: W.30, P.31, H.93, V.95 Ligands: LDR.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.30, A:P.31, A:V.95

1 x LDR: phenanthridin-6(5H)-one(Non-covalent)

LDR.4: 8 residues within 4Å: Chain A: P.31, V.36, L.41, L.43, C.85, N.89, V.95 Ligands: 2ME.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.31, A:V.36, A:L.43 Hydrogen bonds: A:N.89, A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathur, S. et al., Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs. J. Biomol. Struct. Dyn. (2018)

Release Date

2017-09-06

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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