SMTL ID : 5xix.2 (1 other biounit)

The canonical domain of human asparaginyl-tRNA synthetase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

15 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: R.173, Q.243, E.258, Y.259, T.260, E.445, C.461, L.462 Chain B: T.193 Ligand excluded by PLIP GOL.2: 5 residues within 4Å: Chain A: M.175, R.178, D.182, S.292, P.293 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: Y.92, N.93, L.96, L.131 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: D.212, Y.213, F.214 Chain B: L.208, F.209, K.210 Ligand excluded by PLIP GOL.5: 4 residues within 4Å: Chain A: F.185, Y.189, Y.190 Chain B: R.178 Ligand excluded by PLIP GOL.6: 3 residues within 4Å: Chain A: D.379, S.380, R.381 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: Q.222, S.223, H.261, E.263, G.441, L.442 Ligand excluded by PLIP GOL.8: 2 residues within 4Å: Chain B: Y.92, N.93 Ligand excluded by PLIP GOL.9: 10 residues within 4Å: Chain A: T.193 Chain B: R.173, Q.243, E.258, Y.259, T.260, E.445, C.461, L.462, Y.463 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain B: L.96, S.98, A.135, P.136, A.137 Ligand excluded by PLIP GOL.11: 4 residues within 4Å: Chain B: E.378, D.379, S.380, R.381 Ligand excluded by PLIP GOL.12: 5 residues within 4Å: Chain A: Y.190 Chain B: M.175, P.293, A.294, I.297 Ligand excluded by PLIP GOL.13: 8 residues within 4Å: Chain B: R.349, N.392, V.393, T.449, W.450, N.453, R.454, Y.455 Ligand excluded by PLIP GOL.14: 4 residues within 4Å: Chain B: M.175, R.178, D.182, S.292 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain A: K.40, T.77 Chain B: R.187, G.188, Y.190, L.235, G.236, D.237 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.S. et al., Unique N-terminal extension domain of human asparaginyl-tRNA synthetase elicits CCR3-mediated chemokine activity. Int. J. Biol. Macromol. (2018)

Release Date

2018-05-02

Peptides

Asparagine--tRNA ligase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Asparagine--tRNA ligase, cytoplasmic

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