SMTL ID : 5xjb.1 (1 other biounit)

The Crystal Structure of the Minimal Core Domain of the Microtubule Depolymerizer KIF2C Complexed with ADP-Mg-BeFx

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.94, R.96, P.97, T.180, G.181, S.182, G.183, K.184, T.185, H.186, S.298 Ligands: BEF.2, MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.94, A:Q.179, A:G.181, A:S.182, A:G.183, A:G.183, A:K.184, A:T.185, A:H.186, A:S.298, A:S.298 Salt bridges: A:K.184 pi-Stacking: A:H.186, A:H.186

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.2: 11 residues within 4Å: Chain A: K.184, R.286, S.297, S.298, S.300, D.322, L.323, A.324, G.325 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.185, S.297 Ligands: ADP.1, BEF.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.185, A:S.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogawa, T. et al., Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation. Cell Rep (2017)

Release Date

2017-09-13

Peptides

Kinesin-like protein KIF2C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIF2C

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