SMTL ID : 5xjg.1

Crystal structure of Vac8p bound to Nvj1p

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.1: 6 residues within 4Å: Chain A: V.248, D.252, A.282, G.283, P.286, H.287 No protein-ligand interaction detected (PLIP) PE5.3: 8 residues within 4Å: Chain C: Q.293, V.330, R.331, D.334, G.367, E.370, K.371, E.374 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.293

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.2: 5 residues within 4Å: Chain A: E.189, R.192, V.228, D.229 Chain B: D.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, H. et al., Mechanistic insight into the nucleus-vacuole junction based on the Vac8p-Nvj1p crystal structure. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-06-07

Peptides

Vacuolar protein 8: AC
Nucleus-vacuole junction protein 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Vacuolar protein 8

Nucleus-vacuole junction protein 1

Related Entries With Identical Sequence