SMTL ID : 5xly.1

Crystal structure of CheR1 in complex with c-di-GMP-bound MapZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 8 residues within 4Å: Chain B: Q.4, H.5, E.7, R.9, R.13, W.77, R.79 Ligands: C2E.2 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.7, B:R.9, B:R.13, B:R.13, B:R.79 Water bridges: B:Q.4, B:R.9, B:R.9, B:R.9, B:R.79 Salt bridges: B:H.5, B:R.9, B:R.79 pi-Stacking: B:W.77 pi-Cation interactions: B:W.77 C2E.2: 19 residues within 4Å: Chain B: Q.4, H.5, E.7, R.8, R.9, R.10, R.13, D.35, V.36, S.37, H.39, G.40, I.41, L.42, A.76, W.77, F.85, E.86 Ligands: C2E.1 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:Q.4, B:Q.4, B:R.9, B:R.10, B:R.10, B:R.13, B:S.37, B:S.37 Water bridges: B:F.11, B:F.11, B:R.13, B:R.13 Salt bridges: B:R.10, B:R.13, B:D.35 pi-Cation interactions: B:R.13, B:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Structural basis for the regulation of chemotaxis by MapZ in the presence of c-di-GMP. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-08-23

Peptides

Chemotaxis protein methyltransferase 1: A
Cyclic diguanosine monophosphate-binding protein PA4608: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chemotaxis protein methyltransferase 1

Cyclic diguanosine monophosphate-binding protein PA4608