SMTL ID : 5xmf.1

Crystal structure of feline MHC class I for 2,1 angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- MET- ALA- ASN- VAL- SER- THR- GLY- ARG: Gag polyprotein(Non-covalent)

ARG-MET-ALA-ASN-VAL-SER-THR-GLY-ARG.1: 32 residues within 4Å: Chain A: Y.7, Y.9, M.45, Y.59, R.62, E.63, K.66, V.67, N.69, T.70, I.73, D.77, T.80, L.81, Y.84, I.95, Q.96, R.97, Y.99, D.116, S.117, Y.123, T.143, K.146, W.147, E.152, R.155, W.156, Y.159, T.163, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:N.69, A:I.73, A:L.81, A:W.147, A:W.156, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:Y.59, A:R.62, A:E.63, A:K.66, A:D.77, A:R.97, A:R.97, A:Y.99, A:S.117, A:S.117, A:S.117, A:K.146, A:E.152, A:E.152, A:R.155, A:Y.171 Water bridges: A:Y.7, A:K.66, A:D.77 Salt bridges: A:E.63, A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, R. et al., Major Histocompatibility Complex Class I (FLA-E*01801) Molecular Structure in Domestic Cats Demonstrates Species-Specific Characteristics in Presenting Viral Antigen Peptides. J. Virol. (2018)

Release Date

2017-12-13

Peptides

MHC class I antigen alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen alpha chain

Beta-2-microglobulin

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