SMTL ID : 5xn7.1 (1 other biounit)

Crystal structure of the effector domain RID of Vibrio vulnificus MARTX toxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.1: 2 residues within 4Å: Chain A: R.517, F.519 No protein-ligand interaction detected (PLIP) DIO.2: 5 residues within 4Å: Chain A: R.500, L.549, T.550 Ligands: SO4.3, MES.4 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.500 Ligands: DIO.2, CL.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.500

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 2 residues within 4Å: Chain A: T.550 Ligands: DIO.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.488, A:K.488

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 6 residues within 4Å: Chain A: G.111, E.112, S.113, Y.114, Y.152, H.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.111, A:S.113, A:Y.114 Water bridges: A:E.112, A:Y.152

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: D.203, N.206 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: A.553 Ligands: SO4.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, L. et al., Crystal structure of a MARTX toxin effector domain. To Be Published

Release Date

2017-09-27

Peptides

Putative RTX-toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative RTX-toxin

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