- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 2 x N4P: N,N-bis(3-aminopropyl)butane-1,4-diamine(Non-covalent)
N4P.2: 17 residues within 4Å:- Chain A: D.146, Q.147, A.148, D.179, D.180, D.245, P.246, E.248, G.274, T.276, Y.310, W.313, Y.315, Y.336, S.338, T.370
- Ligands: MTA.1
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:A.148, A:T.276, A:Y.336
- Hydrogen bonds: A:D.180, A:E.248, A:G.274, A:Y.315, A:T.370, A:T.370
- Water bridges: A:D.179, A:T.370
- Salt bridges: A:D.146, A:D.245
N4P.9: 16 residues within 4Å:- Chain B: D.146, Q.147, A.148, D.179, D.180, D.245, P.246, E.248, G.274, T.276, Y.310, W.313, Y.315, Y.336, T.370
- Ligands: MTA.8
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:A.148, B:T.276, B:Y.336
- Hydrogen bonds: B:D.146, B:D.180, B:D.245, B:G.274, B:T.370
- Water bridges: B:D.179, B:T.370
- Salt bridges: B:D.146, B:D.245
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: Y.109
- Chain B: A.123, F.124, L.191
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.109
GOL.4: 6 residues within 4Å:- Chain A: K.171, D.240, G.268
- Chain B: E.38, R.39, E.42
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.240, A:D.240, B:R.39
- Water bridges: A:K.171, A:D.240, B:R.39
GOL.5: 7 residues within 4Å:- Chain A: S.46, G.102, G.104, R.106
- Chain B: H.163, G.166, E.169
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:S.46, A:G.104, A:R.106, B:E.169, B:E.169
- Water bridges: A:P.105, B:H.163, B:E.169
GOL.10: 9 residues within 4Å:- Chain A: H.163, G.166, E.169
- Chain B: E.42, S.46, G.102, I.103, G.104, R.106
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.46, B:G.104, B:R.106, A:H.163, A:E.169, A:E.169
- Water bridges: B:P.105, B:R.106, A:E.169
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hidese, R. et al., Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J. (2017)
- Release Date
- 2018-08-15
- Peptides
- N(4)-bis(aminopropyl)spermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 2 x N4P: N,N-bis(3-aminopropyl)butane-1,4-diamine(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hidese, R. et al., Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J. (2017)
- Release Date
- 2018-08-15
- Peptides
- N(4)-bis(aminopropyl)spermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B