SMTL ID : 5xnv.1

Crystal structure of YEATS2 YEATS bound to H3K27ac peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ALA- ALA- ARG- ALY- SER- ALA- PRO- ALA: ALA-ALA-ARG-ALY-SER-ALA-PRO-ALA(Non-covalent)

ALA-ALA-ARG-ALY-SER-ALA-PRO-ALA.1: 13 residues within 4Å: Chain A: H.60, P.61, S.62, Y.63, G.82, W.83, G.84, E.85, F.86, P.87, L.110, R.112, Y.114 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.61, A:Y.63, A:W.83, A:W.83, A:W.83, A:E.85, A:L.110 Hydrogen bonds: A:S.62, A:S.62, A:W.83, A:G.84, A:E.85, A:E.85 Water bridges: A:E.85

3 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 1 residues within 4Å: Chain A: K.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.18, A:K.34 NH4.3: 3 residues within 4Å: Chain A: T.10, S.42, R.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.10, A:S.42, A:R.44 NH4.4: 1 residues within 4Å: Chain A: R.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.72

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: R.112 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mi, W. et al., YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer. Nat Commun (2017)

Release Date

2017-11-01

Peptides

YEATS domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YEATS domain-containing protein 2

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