SMTL ID : 5xof.3 (3 other biounits)

Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with synthesized glycopeptide I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x GLY- PRO- ALA- THR- PRO- ALA- PRO: Peptide from Nitric oxide synthase, endothelial(Non-covalent)

GLY-PRO-ALA-THR-PRO-ALA-PRO.1: 5 residues within 4Å: Chain A: Y.3, F.46, H.47, I.112 Ligands: NDG-SIA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.46, A:F.46, A:I.112

1 x NDG- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-SIA.2: 13 residues within 4Å: Chain A: Y.3, W.29, F.46, H.47, R.96, Q.107, Q.108, W.109, Q.110 Ligands: GLY-PRO-ALA-THR-PRO-ALA-PRO.1, GLY-PRO-ALA-THR-PRO-ALA-PRO.1, GLY-PRO-ALA-THR-PRO-ALA-PRO.1, GLY-PRO-ALA-THR-PRO-ALA-PRO.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.3, A:W.29 Hydrogen bonds: A:Y.3, A:Y.3, A:Q.108, A:Q.110 Water bridges: A:Q.108, A:Q.108 Salt bridges: A:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furukawa, A. et al., Structural and thermodynamic analyses reveal critical features of glycopeptide recognition by the human PILR alpha immune cell receptor. J. Biol. Chem. (2017)

Release Date

2017-10-25

Peptides

Paired immunoglobulin-like type 2 receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Paired immunoglobulin-like type 2 receptor alpha

Related Entries With Identical Sequence