SMTL ID : 5xoh.1

Crystal structure of bergaptol o-methyltransferase complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.158, M.175, S.179, G.203, G.204, G.205, D.226, L.227, V.230, D.246, M.247, F.248, K.260, W.261, I.262, W.266 Ligands: 8B6.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.179, A:G.203, A:G.205, A:D.246, A:D.246, A:M.247 Water bridges: A:K.260 Salt bridges: A:K.260 pi-Stacking: A:F.158 SAH.3: 17 residues within 4Å: Chain B: F.158, M.175, S.179, G.203, G.204, G.205, D.226, L.227, V.230, D.246, M.247, F.248, K.260, W.261, I.262, W.266 Ligands: 8B6.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.179, B:G.203, B:G.205, B:D.246, B:M.247 Water bridges: B:K.260 Salt bridges: B:K.260 pi-Stacking: B:F.158

2 x 8B6: 4-oxidanylfuro[3,2-g]chromen-7-one(Non-covalent)

8B6.2: 16 residues within 4Å: Chain A: L.122, H.126, I.157, F.158, F.171, M.175, W.261, H.264, S.265, L.312, V.315, M.316, Y.319, V.320 Chain B: T.23 Ligands: SAH.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.158, A:L.312, A:Y.319 Hydrogen bonds: A:W.261 Salt bridges: A:H.126 pi-Stacking: A:F.171, A:W.261 8B6.4: 16 residues within 4Å: Chain A: T.23 Chain B: L.122, H.126, I.157, F.158, F.171, M.175, W.261, H.264, S.265, L.312, V.315, M.316, Y.319, V.320 Ligands: SAH.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.158, B:L.312, B:Y.319 Hydrogen bonds: B:W.261 Salt bridges: B:H.126 pi-Stacking: B:F.171, B:W.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Crystal structure of bergaptol o-methyltransferase complex. To Be Published

Release Date

2018-05-23

Peptides

Bergaptol O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bergaptol O-methyltransferase