SMTL ID : 5xqx.1

Human CDK8-CYCC in complex with compound 4: N-methyl-4-(4-pyridyl)-1H-pyrrole-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.159, D.160, L.161, Y.208, I.224, D.225, A.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.159, A:L.161, A:D.225 Water bridges: A:A.210 GOL.3: 4 residues within 4Å: Chain A: R.80, K.92, V.93 Chain B: D.146 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.93, A:V.93, B:D.146

1 x 8CC: N-methyl-4-pyridin-4-yl-1H-pyrrole-2-carboxamide(Non-covalent)

8CC.2: 11 residues within 4Å: Chain A: Y.41, V.44, A.59, K.61, F.106, D.107, Y.108, A.109, L.167, A.181, D.182 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.44, A:A.59, A:L.167 Hydrogen bonds: A:A.109 Water bridges: A:D.182, A:D.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, X. et al., Discovery of potent and selective CDK8 inhibitors through FBDD approach. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-08-09

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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