SMTL ID : 5xr8.1

Crystal structure of the human CB1 in complex with agonist AM841

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: S.217, T.218, T.219, G.220, N.221, T.222, S.265, T.266, W.267, G.268, D.269, C.300, G.301, D.302, W.305, Y.307, F.308, C.309, G.335 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:W.267, A:W.267, A:D.269 Hydrogen bonds: A:T.218, A:T.219, A:T.219, A:G.220, A:N.221, A:N.221, A:T.222, A:T.222, A:S.265, A:S.265, A:T.266, A:T.266, A:G.268, A:G.301, A:D.302, A:Y.307, A:C.309 pi-Stacking: A:W.305, A:W.305, A:W.305, A:W.305

1 x 8D0: (6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-3-(8-isothiocyanato-2-methyl-octan-2-yl)-6,6-dimethyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-1-ol(Non-covalent)

8D0.2: 19 residues within 4Å: Chain A: F.72, S.75, F.76, F.79, F.91, L.95, V.98, T.99, I.169, F.170, I.173, Y.177, L.178, W.181, L.383, M.387, F.403, S.407, C.410 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.79, A:F.79, A:F.79, A:F.91, A:L.95, A:T.99, A:F.170, A:L.178, A:W.181, A:W.181, A:W.181, A:L.383, A:F.403 Hydrogen bonds: A:T.99, A:S.407, A:S.407 pi-Stacking: A:F.72, A:F.170

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain A: H.56, S.60, V.63, L.67, S.101, F.139, C.140, W.143, I.147 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.63, A:L.67, A:F.139, A:W.143, A:W.143, A:W.143 Hydrogen bonds: A:H.56

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: S.54, Y.55, H.56 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hua, T. et al., Crystal structures of agonist-bound human cannabinoid receptor CB1. Nature (2017)

Release Date

2017-07-12

Peptides

Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1

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