SMTL ID : 5xra.1

Crystal structure of the human CB1 in complex with agonist AM11542

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 18 residues within 4Å: Chain A: S.217, T.218, T.219, G.220, N.221, T.222, S.265, T.266, W.267, G.268, D.269, C.300, G.301, D.302, W.305, Y.307, F.308, C.309 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:W.267, A:W.267, A:W.305 Hydrogen bonds: A:T.218, A:T.219, A:T.219, A:G.220, A:N.221, A:N.221, A:T.222, A:T.222, A:T.222, A:S.265, A:T.266, A:T.266, A:G.268, A:D.302, A:Y.307, A:C.309 pi-Stacking: A:W.305, A:W.305, A:W.305

1 x 8D3: (6aR,10aR)-3-(8-bromanyl-2-methyl-octan-2-yl)-6,6,9-trimethyl-6a,7,10,10a-tetrahydrobenzo[c]chromen-1-ol(Non-covalent)

8D3.2: 19 residues within 4Å: Chain A: F.72, S.75, F.76, F.79, F.91, L.95, V.98, T.99, I.169, F.170, P.171, I.173, Y.177, L.178, W.181, L.383, M.387, F.403, S.407 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.72, A:F.79, A:F.79, A:F.91, A:V.98, A:T.99, A:F.170, A:W.181, A:L.383, A:F.403 Hydrogen bonds: A:S.407, A:S.407 pi-Stacking: A:F.72, A:F.170

2 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 1 residues within 4Å: Chain A: S.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.16 OLA.4: 7 residues within 4Å: Chain A: L.40, R.47, S.54, Y.55, H.56, V.63 Ligands: CLR.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.40, A:V.63 Salt bridges: A:R.47, A:H.56

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.5: 4 residues within 4Å: Chain A: Y.74, I.77, D.78, F.82 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.74, A:Y.74 Hydrogen bonds: A:R.84 OLC.6: 8 residues within 4Å: Chain A: H.56, F.57, L.111, D.115, I.129, V.130, A.135, F.139 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.130 Hydrogen bonds: A:D.115, A:D.115

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 1 residues within 4Å: Chain A: A.138 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.8: 9 residues within 4Å: Chain A: H.56, S.60, V.63, L.67, A.100, C.140, W.143, I.147 Ligands: OLA.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.63, A:A.100, A:W.143, A:W.143, A:W.143, A:I.147 Hydrogen bonds: A:H.56, A:H.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hua, T. et al., Crystal structures of agonist-bound human cannabinoid receptor CB1. Nature (2017)

Release Date

2017-07-12

Peptides

Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1

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