SMTL ID : 5xru.2 (1 other biounit)

Crystal structure of Notothenia coriiceps adenylate kinase variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 30 residues within 4Å: Chain A: G.16, P.17, G.18, S.19, G.20, K.21, G.22, T.23, S.39, G.40, L.43, R.44, M.61, E.65, L.66, V.67, V.72, G.94, Y.95, R.97, Q.101, R.128, L.129, R.132, R.138, R.149, S.175, L.177, V.179, V.182 41 PLIP interactions: 41 interactions with chain A Hydrogen bonds: A:G.18, A:S.19, A:G.20, A:K.21, A:G.22, A:T.23, A:T.23, A:S.39, A:G.40, A:E.65, A:V.67, A:R.97, A:Q.101, A:Q.101, A:R.132, A:L.177 Water bridges: A:S.38, A:R.44, A:R.44, A:R.97, A:R.128, A:R.128, A:R.132, A:R.138, A:R.149, A:R.149, A:V.179 Salt bridges: A:K.21, A:K.21, A:K.21, A:R.44, A:R.97, A:R.97, A:R.132, A:R.138, A:R.138, A:R.138, A:R.149, A:R.149 pi-Cation interactions: A:R.128, A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, S. et al., Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes. Sci Rep (2017)

Release Date

2018-06-13

Peptides

adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

adenylate kinase

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