SMTL ID : 5xrz.1

Structure of a ssDNA bound to the inner DNA binding site of RAD52

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-11-mer

Ligands

10 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: E.143 Chain B: E.148 Chain L: T.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.143 K.2: 2 residues within 4Å: Chain B: E.143 Chain C: E.148 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.143 K.3: 3 residues within 4Å: Chain C: E.143 Chain D: R.58 Chain L: T.12 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.143 K.4: 4 residues within 4Å: Chain D: E.143 Chain E: E.148 Chain L: T.16, T.17 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.143 K.5: 3 residues within 4Å: Chain E: E.143 Chain F: E.148, D.152 No protein-ligand interaction detected (PLIP) K.6: 3 residues within 4Å: Chain F: E.143 Chain G: E.148 Chain L: T.25 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.143 K.7: 3 residues within 4Å: Chain G: E.143 Chain H: E.148 Chain L: T.28 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.143 K.8: 3 residues within 4Å: Chain H: E.143 Chain I: E.148 Chain L: T.33 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:E.143 K.9: 3 residues within 4Å: Chain I: E.143 Chain J: E.148 Chain L: T.37 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:E.143 K.10: 3 residues within 4Å: Chain A: R.58 Chain K: E.143 Chain L: T.1 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:E.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saotome, M. et al., Structural Basis of Homology-Directed DNA Repair Mediated by RAD52. iScience (2018)

Release Date

2018-04-25

Peptides

DNA repair protein RAD52 homolog: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

DNA repair protein RAD52 homolog