SMTL ID : 5xs0.2 (1 other biounit)

Structure of a ssDNA bound to the outer DNA binding site of RAD52

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-11-mer

Ligands

1 x DC- DC- DC- DC- DC- DC: ssDNA (5'-D(*CP*CP*CP*CP*CP*C)-3')(Non-covalent)

DC-DC-DC-DC-DC-DC.1: 11 residues within 4Å: Chain F: L.135, K.136, S.137, L.140 Chain G: G.61, G.62, N.103, K.105, Y.107, E.133, G.134 Protein-ligand interaction information (PLIP) not available

1 x DC- DC- DC- DC- DC- DC- DC- DC: ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3')(Non-covalent)

DC-DC-DC-DC-DC-DC-DC-DC.2: 18 residues within 4Å: Chain I: L.135, K.136, S.137, L.140 Chain J: G.61, G.62, G.63, K.105, Y.107, E.133, G.134, L.135, K.136, S.137, L.140 Chain K: G.61, G.62, Q.64 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saotome, M. et al., Structural Basis of Homology-Directed DNA Repair Mediated by RAD52. iScience (2018)

Release Date

2018-04-25

Peptides

DNA repair protein RAD52 homolog: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
N

D
O

E
P

F
Q

G
R

H
S

I
T

J
U

K
V

DNA repair protein RAD52 homolog

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