SMTL ID : 5xso.1

Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: M.26, S.29, L.33, P.116, F.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.29, A:F.117 Water bridges: A:F.117 GOL.2: 5 residues within 4Å: Chain A: M.192, T.193, Q.196, A.197, N.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.193, A:N.198 Water bridges: A:T.193, A:Q.196, A:Q.196 GOL.3: 5 residues within 4Å: Chain A: R.27, D.28, N.31, L.43 Ligands: FMT.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.28, A:N.31 Water bridges: A:R.27, A:D.28 GOL.4: 3 residues within 4Å: Chain A: G.94, H.95, K.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.95, A:H.95 Water bridges: A:K.115, A:K.115

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 1 residues within 4Å: Chain A: D.22 No protein-ligand interaction detected (PLIP) FMT.6: 3 residues within 4Å: Chain A: P.116, F.117, E.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.116 FMT.7: 2 residues within 4Å: Chain A: A.25, D.28 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.29 FMT.8: 2 residues within 4Å: Chain A: S.152, K.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.194 Water bridges: A:K.194 FMT.9: 3 residues within 4Å: Chain A: L.43, D.45 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.45 Water bridges: A:R.27 FMT.10: 3 residues within 4Å: Chain A: R.121, A.124, M.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.111, A:R.121 Water bridges: A:A.124, A:S.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, G.S.A. et al., Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system. Sci Signal (2018)

Release Date

2018-05-23

Peptides

Response regulator FixJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Response regulator FixJ

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